g_rama(1) - Linux man page

Name

g_rama - computes Ramachandran plots

VERSION 4.5.4-dev-20110404-bc5695c

Synopsis

g_rama -f traj.xtc -s topol.tpr -o rama.xvg -[no]h -[no]version -niceint -b time -e time -dt time -[no]w -xvg enum

Description

g_rama selects the phi/psi dihedral combinations from your topology file and computes these as a function of time. Using simple Unix tools such as grep you can select out specific residues.

Files

-f traj.xtc Input Trajectory: xtc trr trj gro g96 pdb cpt

-s topol.tpr Input Run input file: tpr tpb tpa

-o rama.xvg Output xvgr/xmgr file

Other Options

-[no]hno Print help info and quit

-[no]versionno Print version info and quit

-nice int 19 Set the nicelevel

-b time 0 First frame (ps) to read from trajectory

-e time 0 Last frame (ps) to read from trajectory

-dt time 0 Only use frame when t MOD dt = first time (ps)

-[no]wno View output .xvg, .xpm, .eps and .pdb files